Publications
Researcher ID
 ORCID
 Scopus
 Exaly

Researcher-ID : B2002-2014

 ORCID iD icon orcid.org/0000-0003-0242-191X
AuthorId : 7004054872
  Yves-Usson
2023
Tafech A., Beaujean C., Usson Y., Stéphanou A.
Generalization of the ratiometric method for pH measurement with fluorescent probes,
Biomolecules. 2023,
DOI : 10.3390/biom13030442


2022
Laforgue L., Fertin A., Usson Y., Verdier C., Laurent V. M.
Efficient deformation mechanisms enable invasive cancer cells to migrate faster in 3D collagen networks,
Sci. Rep . 2022, 12, 7867
DOI : 10.1038/s41598-022-11581-2
Auriau J., Usson Y., Jouk P-S.
The nematic chiral liquid crystal structure of the cardiac myoarchitecture: Disclinations and topological singularities.
J. Cardiovasc. Dev. Dis., 2022, 9, 371
DOI : 10.3390/jcdd9110371
Laurin D., Mercier C., Nyamekye Q., Suzanne Robert J., Usson Y., Schneider D., Hindré T., Schaack B.
Extracellular vesicles from 50,000 generation clones of the Escherichia coli Long-Term Evolution Experiment
Int. J. of Mol. Sci., 2022, special Issue : Study of the Molecular Mechanisms of the Therapeutic Properties of Extracellular Vesicles.
DOI : 10.3390/ijms232314580
2021
Musnier B.,  Henry M., Vollaire J., Coll J.-L.,Usson Y., Coll J-L., Josserand V.,Le Guével X.
 Optimization of spatial resolution and scattering effects for biomedical fluorescence imaging by using sub-regions of the shortwave infrared spectrum
Journal of Biophotonics, 2021 Feb;14(2):e202000345. Epub 2020 Oct 11.
DOI:10.1002/jbio.202000345
Baulin V., Usson Y., Le Guevel X.
Deep learning: step forward to high-resolution in vivo shortwave infrared imaging
J. Biophotonics,July 2021, 14 (7):
DOI : jbio.202100102
Jouk P.S., Usson Y.
The Myosin Myocardial Mesh Interpreted as a Biological Analogous of Nematic Chiral Liquid Crystals.
J. Cardiovasc. Dev. Dis., Dec 2021, 8, 179
DOI : 10.3390/jcdd8120179

2020
Yu Z., Musnier B., Wegner D., Henry M., Chovelon B., Desroches-Castan A., Fertin A., Resch-Genger U., Bailly S., Coll J.-L., Usson Y., Josserand V., Le Guével X.,

High-Resolution Shortwave Infrared Imaging of Vascular Disorders Using Gold Nanoclusters

ACS Nano 2020; 14(4): 4973-4981
DOI : 10.1021/acsnano.0c01174


Auriau J., Truong B.L., Douchin S., Bouvaist H., Michalowicz G., Usson Y., Jouk P.-S.
Longitudinal Study by Two-Dimensional Speckle-Tracking Echocardiography of the Left Ventricle Rotational Mechanics during Postnatal Adaptation in Healthy Newborns
JASE J. of Am. Soc. Echocardiography, 2020,33 (2) : 252-254
DOI : 10.1016/j.echo.2019.09.017
Lavaud J., Henry M., Gayet P., Fertin A., Vollaire J., Usson Y., Coll J-L., Josserand V.,
Noninvasive monitoring of liver metastasis development via combined multispectral photoacoustic imaging and fluorescence diffuse optical tomography
Int. J. Biol. Sci. 2020, Vol. 16: 1616-1628
DOI: 10.7150/ijbs.40896
Truong B. L., PJouk P-S., Auriau J., Michalowicz G., Usson Y.
Polarized Light Imaging of the Myoarchitecture in Tetralogy of Fallot in the Perinatal Period
Frontiers in Pediatrics, 2020 (8) :
DOI: 10.3389/fped.2020.503054


2019
Fertin A., Laforgue L., Duperray A., Laurent V. M., Usson Y., Verdier C.,
Displacement fields using correlation methods as a tool to investigate cell migration in 3D collagen gels
J. of Microscopy, 2019, Vol 275 (3) : 172-182
DOI : 10.1111/jmi.12825
Allier C., Hervé L., Mandula O., Blandin P., Usson Y., Savatier J., Monneret S., Morales S..
Quantitative phase imaging of adherent mammalian cells: a comparative study.
Biomedical Optic Express , 2019,Volume 10,Issue 6, pp 2769–2783;
DOI : 10.1364/BOE.10.002768
Pansieri J., Josserand V, Lee S-J, Rongier A., Imbert I., Moulin Sallanon M., Kovari E., Dane T. G., Vendrely V., Chaix-Pluchery O., Guidetti M., Vollaire J., Fertin A., Usson Y., Rannou P., Coll J.-L., Marquette C., Forge V.
Ultraviolet-visible-near-infrared optical properties of amyloid fibrils shed light on amyloidogenesis
Nature Photonics, 2019,  23:473-479
DOI: 10.1038/s41566-019-0422-6

2018
Yang F., Zhu Y.-M., Michalowicz P.-S., Fanton F., Viallon M., Clarysse P., Croisille P., Usson Y.
Quantitative comparison of human myocardial fiber orientations derived from DTI and polarized light imaging.
Phys Med Biol 2018 Oct 23;63(21):215003.
Epub 2018 Oct 23.

Jouk P-S, Truong B L,Michalowicz G, Usson Y.
Postnatal myocardium remodelling generates inhomogeneity in the architecture of the ventricular mass
Surgical and Radiologic Anatomy,January 2018,Volume 40,Issue 1, pp 75–83;
EPUB November 2017, DOI : 10.1007/s00276-017-1945-5

Alimi A., Usson Y., Jouk P.-S., Michalowicz G., Deriche R.
An Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging
ISBI 2018 - IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington, D.C., United States. pp.1-4, 2018, 〈http://biomedicalimaging.org/2018/〉


2017
Allier C, Morel S, Vincent R, Ghenim L, Navarro F, Menneteau M, Bordy T, Hervé L, Cioni O, Gidrol X, Usson Y, Dinten JM.
Imaging of dense cell cultures by multiwavelength lens-free video microscopy.
Cytometry A. 2017 Feb 27. , May 2017 Pages 433-442
DOI: 10.1002/cyto.a.23079. [Epub ahead of print] PMID: 28240818


Allier C, Vincent R, Navarro F, Menneteau M, Ghenim L, Gidrol X, Bordy T, Hervé L, Cioni O, Bardin, Bornens M, Usson Y, Morales S
Lens-free Video Microscopy for the Dynamic and Quantitative Analysis of Adherent Cell Culture
JOVE (Journal of Vizualized Experiments), Video article
URL: https://www.jove.com/video/56580
DOI: 10.3791/56580


2016
Bagur R, Tanguy S, Foriel S, Grichine A, Sanchez C, Pernet-Gallay K, Kaambre T, Kuznetsov AV, Usson Y, Boucher F, Guzun R.
The impact of cardiac ischemia/reperfusion on the mitochondria-cytoskeleton interactions
Biochim Biophys Acta. 2016 Jun;1862(6):1159-71.
DOI: 10.1016/j.bbadis.2016.03.009. Epub 2016 Mar 11.
PMID: 26976332

Desrosiers P-A, Michalowicz G., Jouk P-S, Usson Y, Zhu Y,
Study of myocardial cell inhomogeneity of the human heart: simulation and validation using polarized light imaging
Med. Phys. 2016 May;43(5):2273.
DOI: 10.1118/1.4945272 PMID: 27147339

2015
Guzun R, Kaambre T, Bagur R, Grichine A, Usson Y, Varikmaa M, Anmann T, Tepp K, Timohhina N, Shevchuk I, Chekulayev V, Boucher F, Dos Santos P, Schlattner U, Wallimann T, Kuznetsov AV, Dzeja P, Aliev M, Saks V.
Modular organization of cardiac energy metabolism: energy conversion, transfer and feedback regulation.
 Acta Physiol (Oxf). 2015, 13 (1): 83-106 ;
DOI: 10.1111/apha.12287. [Epub ahead of print] PMID: 24666671

Mirea I, Varray F, Zhu YM, Fanton L, Langer M, Jouk PS, Michalowicz G, Usson Y, Magnin IE
Very High-Resolution Imaging of Post-Mortem Human Cardiac Tissue Using X-Ray Phase Contrast Tomography
FUNCTIONAL IMAGING AND MODELING OF THE HEART (FIMH 2015) Lecture Notes in Computer Science, 2015 Volume: 9126  Pages: 172-179 DOI: 10.1007/978-3-319-20309-6_20

Herbomel G, Grichine A, Fertin A, Delon A, Vourc'h C, Souchier C, Usson Y
Wavelet transform analysis of chromatin texture changes during heat shock
 J Microsc. 2016 Jun;262(3):295-305.
DOI: 10.1111/jmi.12363. Epub 2015 Dec 22. PMID: 26694695


2014
Tisseyre C, Ahmadi M, Bacot S, Dardevet L, Perret P, Ronjat M, Fagret D, Usson Y, Ghezzi C, De Waard M.
Quantitative evaluation of the cell penetrating properties of an iodinated Tyr-l-maurocalcine analog.
Biochim Biophys Acta. 2014 Mar 22. pii: S0167-4889(14)00101-3.
DOI: 10.1016/j.bbamcr.2014.03.017. [Epub ahead of print] PMID: 24667409

2013
Nadeau G, Coutton C, Amblard F, Michalowicz G, Frasca S, Fertin A, Devillard F, Satre V, Usson Y, Jouk PS.
Interphase fluorescent in situ hybridization detection of the 7q11.23 chromosomal inversion in a clinical laboratory: automated versus manual scoring.
 Clin Chem Lab Med. 2013 Apr;51(4):e41-4.
PMID: 23072851

Varikmaa M, Guzun R, Grichine A, Gonzalez-Granillo M, Usson Y, Boucher F, Kaambre T, Saks V.
Matters of the heart in bioenergetics: mitochondrial fusion into continuous reticulum is not needed for maximal respiratory activity.
 J Bioenerg Biomembr. 2013 Aug;45(4):319-31. DOI: 10.1007/s10863-012-9494-4
PMID: 23271420

Herbomel G, Kloster-Landsberg M, Folco EG, Col E, Usson Y, Vourc'h C, Delon A, Souchier C.
Dynamics of the full length and mutated heat shock factor 1 in human cells.
 PLoS One. 2013 Jul 8;8(7):e67566. DOI: 10.1371/journal.pone.0067566. Print 2013.
PMID: 23861773


2012
Gonzalez-Granillo M, Grichine A, Guzun R, Usson Y, Tepp K, Chekulayev V, Shevchuk I, Karu-Varikmaa M, Kuznetsov AV, Grimm M, Saks V, Kaambre T.
Studies of the role of tubulin beta II isotype in regulation of mitochondrial respiration in intracellular energetic units in cardiac cells.
 J Mol Cell Cardiol. 2012 52 (2) : 437-447 Epub 2011 Aug 5.
PMID: 21846472

Guzun R, Gonzalez-Granillo M, Karu-Varikmaa M, Grichine A, Usson Y, Kaambre T, Guerrero-Roesch K, Kuznetsov A, Schlattner U, Saks V.
Regulation of respiration in muscle cells in vivo by VDAC through interaction with the cytoskeleton and MtCK within Mitochondrial Interactosome.
Biochim Biophys Acta. 2012 Jun;1818(6):1545-54. Epub 2012 Jan 4.
PMID: 22244843

Leray A, Spriet C, Trinel D, Usson Y, Héliot L.
Generalization of the polar representation in time domain fluorescence lifetime imaging microscopy for biological applications: practical implementation.
 J Microsc. 2012 Oct;248(1):66-76.
PMID: 22971219

Desrosiers P-A, Michalowicz G., Jouk P-S, Usson Y, Zhu Y,
Modeling of the Optical Behavior of Myocardial Fibers in Polarized Light Imaging
 O. Camara et al. (Eds.): STACOM 2012, LNCS 7746, pp. 235–244, 2013.
DOI:10.1007/978-3-642-36961-2_27
Meike Kloster-Landsberg M., Gaëtan Herbomel G., Wang., Derouard J., Vourc'h C., Usson Y., Souchier C., Delon A.
Cellular Response to Heat Shock Studied by Multiconfocal Fluorescence Correlation Spectroscopy
 Biophysical Journal, 2012 Sept.,103, (6), 1110-1119
PMID : 22995483


2011
Galland R, Gao J, Kloster M, Herbomel G, Destaing O, Balland M, Souchier C, Usson Y, Derouard J, Wang I, Delon A.
Multi-confocal fluorescence correlation spectroscopy.
 Front Biosci (Elite Ed). 2011 Jan 1;3:476-88.
PMID: 21196328

Leray A, Spriet C, Trinel D, Blossey R, Usson Y, Héliot L.
Quantitative comparison of polar approach versus fitting method in time domain FLIM image analysis.
 Cytometry A. 2011 Feb;79(2):149-58. DOI: 10.1002/cyto.a.20996. Epub 2010 Dec 2.
PMID: 21265008

Trinel D., Leray A., Spriet C., Usson Y., Héliot L.
Upgrading time domain FLIM using an adaptative Monte Carlo Dat Inflation algorithm
 Cytometry A. 2011 Jul;79():528-537.
DOI: 10.1002/cyto.a.21054. Epub 2011 May 12.
PMID: 21567936

Leray A , Trinel D, Spriet C, Usson Y , Heliot L
Improving time domain fluorescence lifetime imaging with an Adaptive Monte Carlo Data Inflation (AMDI) algorithm
In MEDICAL LASER APPLICATIONS AND LASER-TISSUE INTERACTIONS V  , eds Sroka, R; Lilge, LD;
 Proceedings of SPIE, Vol. 8092: 80920C

2010
Fournier A , McLeer-Florin A, Lefebvre C, Duley S, Barki L, Ribeyron J, Kassambara A, Hamaidia S, Granjon A, Gressin R, Lajmanovich A, Bonnefoix T, Chauvelier S , Debernardi A , Rousseaux S , de Fraipont F, Figeac M, Kerckaert JP , De Vos J , Usson Y, Delaval K, Grichine A, Vourc'h C, Khochbin S , Feil R , Leroux D , Callanan MB
1q12 chromosome translocations form aberrant heterochromatic foci associated with changes in nuclear architecture and gene expression in B cell lymphoma,
 EMBO MOLECULAR MEDICINE, 2010,   2 (5):159-171
PMID: 20432501

Mariko B, Ghandour Z, Raveaud S, Quentin M, Usson Y, Verdetti J, Huber P, Kielty C, Faury G.
Microfibrils and fibrillin-1 induce integrin-mediated signaling, proliferation and migration in human endothelial cells.
 Am J Physiol Cell Physiol. 2010 Aug 4. 299 (5):  C977-C987
PMID: 20686071

Pena E, Ohayon J, Usson Y, Azancot A, Doblare M
Finite element study of the fetal heart biomechanics during cardiac cycle
 Revist Internacional de metodos numericos para calculo y diseño en ingenieria, 2010, <26 (2): 109-119

2009
Dubuisson E., Monnier V., Sanz-Menez N., Boury B., Usson Y., Pansu R. B., Ibanez A.
Brilliant molecular nanocrystals emerging from sol-gel thin films : toward a new generation of fluorescent biochips.
Nanotechnology, 2009 20, 315301 (7pp)
PMID: 19597245

Béraud N, Pelloux S, Usson Y, Kuznetzov A V, Ronot X, Tourneur Y, Saks V,
Mitochondrial dynamics in heart cells : very low amplitude high frequency fluctuations in adult cariodmyocytes and flow motion in non beating hl-1 cells,
J. Bioenerg. Biomembr. 2009 (online) sous presse.
PMID: 19399598

Kamgoué A, Ohayon J, Usson Y, Riou L, Tracqui P,
Quantification of cardiomyocyte contraction based on image correlation analysis.
Cytometry A. (on line 2008 Dec 23), 2009,75A :298-308.
PMID: 19107827


Tayyab M, Usson Y , Leveillard T , Demongeot J
Imaging and Modelling of a Degenerative Disease of Retina
 INTERNATIONAL CONFERENCE ON ADVANCED INFORMATION NETWORKING AND APPLICATIONS WORKSHOPS: WAINA, VOLS 1 AND 2    Pages: 936-941

Maître E., Milcent T., Cottet G.-H., Raoult A., Usson Y.,
Applications of level set methods in computational biophysics
Mathematical and Computer Modelling . 2009, Volume: 49 Issue: 11-12 : 2161-2169
DOI: 10.1016/j.mcm.2008.07.026


2008
Spriet C., Trinel D.,  Riquet F.,  Vandenbunder B.,  Usson Y., Héliot L.,
Enhanced FRET contrast in lifetime imaging.
 Cytometry, 2008, 73A:745-753
PMID: 18496850


2007
Jouk P.-S., Mourad A., Milisic V., Michalowicz G., Raoult A., Caillerie D., Usson Y.
Analysis of the fiber architecture of the heart by quantitative polarized light microscopy. Accuracy, limitations and contribution to the study of the fiber architecture of the ventricles during fetal and neonatal life.
 Eur J Cardiothorac Surg. 2007 May; 31(5):915-21.
PMID: 17350851


2006
Perret-Vivancos C, Debon A., Ardail D., Raccurt M., Usson Y., Lobie P.E.,
Growth Hormone activity in mitochondria depends on GH receptor BOX 1 and involves caveolar pathway targeting
 Experimental Cell Research, 2006, 312 : 215-232
PMID: 16352305

Delon A., Usson Y., Derouard J., Biben T., Souchier C.,
Continuous photobleaching in vesicle and living cells : a measure of diffusion and compartmentation
Biophysical Journal, 2006 : 90, 2548-2562
PMID: 16428281

Collin O., Tracqui P., Stephanou A., Usson Y., Clément-Lacroix J, Planus E.,
Spatio-temporal dynamics of actin-rich adhesion microdomains influence of substrate flexibility
 J. Cell Sci., 2006 : 1914-1925
PMID: 16636076

Luciani J., Depetris D., Usson Y., Metzler-Guillemain C., Mignon-Ravix V., Mitchell M. J., Megarbane A., Sarda P., Sirma H., Moncla A., Feunteun J., Mattei M.-G.,
PML nuclear bodies are highly organized DNA-protein structures with a function in heterochromatin remodelling at the G2-phase,
 J. Cell Sci., 2006 , 119: 2518-2531
PMID: 16735446


2005
Barki-Celli L., Lefebvre C., Le Baccon P., Nadeau G., Bonnefoix T., Usson Y., Vourc'h C., Khochbin S., Leroux D., Callanan M.,
Differences in nuclear positioning of 1q12 pericentric heterochromatin in normal and tumor B lymphocytes with 1q rearrangements.
Genes Chromosomes Cancer, 2005 43(4):339-49.
PMID: 15846776

Pustoc'h A., Ohayon J., Usson Y., Kamgoue A., Tracqui P.,
An integrative model of the self-sustained oscillating contractions of cardiac myocytes
 Acta Biotheor. 2005;53(4):277-93.

Botzung-Appert E., Zaccaro J., Gourgeon C., Usson Y., Baldeck P., Ibanez A.,
Spatial control of organic nanocrystal nucleation in sol-gel thin films for 3D optical data storage devices or chemical multi-sensors
 J. of Crystal Growth, 2005,283 : 444-449.


2004
Kuznetzov A.V, Usson Y., Leverve X., Margreiter R.,
Subcellular heterogeneity of mitochondrial function and dysfunction : evidence obtained by confocal imaging,
 Mol. Cell. Biochem.,2004, 256-257:359-365.

Kuznetsov A.V., Schneeberger S., Renz O, Meusburger H., Saks V., Usson Y., Margreiter R.,
Functional heterogeneity of mitochondria after cardiac cold ischemia and reperfusion revealed by confocal imaging,
 Transplantation., 2004, 77(5):754-756.
PMID: 15021841
Tropres I., Lamalle L., Peoc'h M., Farion R., Usson Y., Decorps M., Remy C.
In vivo assessment of tumoral angiogenesis,
 Magn.Reson. Med.,2004, 51 (3): 533-541.
PMID: 15004795

Delon A., Usson Y., Derouard J., Biben T., Souchier C.,
Photobleaching, mobility and compartmentalisation : inferences in fluorescence correlation spectroscopy,
 Journal of Fluorescence,2004, 14(3):255-267.
PMID: 15615207

Kuznetzov A.V., Schneeberger S., Seiler R.,Brandacher G., Mark W., Saks V., Usson Y., Margreiter R., Gnaiger E.,
Mitochondrial defects and heterogeneous cytochrome c release after cardiac cold ischemia and reperfusion,
Am. J. Physiol. Heart Circ. Physiol., 2004, 286(5):1633-1641.

Pustoc’h A., Ohayon J., Usson Y., Tracqui P.,
Modelling the oscillating calcium-induced anisotropic contraction of the myocytes,
in Mécanotransduction 2004, eds Vinçon I, Oddou C., Renaud J.P., Ribreau C., Moreau M.R,  GAMC, ISBN2-9516368, 2004, p.71-76

Pustoc’h A., Boudou T., Ohayon J., Usson Y., Tracqui P.,
Finite element modelling of the calcium-induced contraction of cardio-myocytes based on time-lapse videomicroscopy,
in WEAS transactions  Information Science & Applications, ISBN 1790-0832, 2004, 1 : 376-378.


2003
Appaix F., Kuznetsov A.V., Usson Y., Kay L., Adrienko T., Olivares J., Kaambre T., Sikk P., Margreiter R., Saks V.,
Possible role of cytoskeleton in intracellular arrangement and regulation of mitochondria,
Special review series - Biogenesis and Physiological Adaptation of Mitochondria
Experimental Physiology, 2003, 88 (1): 175-190.
PMID: 12525866

Lefournier V., Peoc'h M., Usson Y., Bosson J.-L., Grand S., Pasquier B., Le Bas J.-F.,
Magnetic resonance cerebral blood volume maps. Comparison with histologic findings in different types of brain lesions.
J. Neuroradiol., 2003, 30 (1): 3-9.
PMID: 12624585
Andrienko T., Kuznetsov A.V., Kaambre T., Usson Y., Orosco A., Appaix F., Tiivel T., Sikk P., Vendelin M., Margreiter R., Saks V.A.,
Metabolic consequences of functional complexes of mitochondria, myofibrils and sarcoplasmic reticulum in muscle cells,
J Exp Biol., 2003 Jun 15;206(Pt 12):2059-2072.
PMID: 12756288

Saks V., Kuznetsov A., Andrienko T., Usson Y., Appaix F., Guerrero K., Kaambre T., Sikk P., Lemba M., Vendelin M.,
Heterogeneity of ADP Diffusion and Regulation of Respiration in Cardiac Cells,
Biophys J. , 2003 May; 84(5):3436-56.
PMID: 12719270

Kuznetzov A.V., Kunz W., Saks V., Usson Y., Mazat J-P., Letellier T., Gellerich F., Margreiter R.,
Cryopreservation of mitochondria and mitochondrial function in cardiac and skeletal muscle fibers,
Analytical Biochem., 2003, 319(2): 296-303.

Guigandon A., Akhouaryri O., Usson Y., Rattner A., Laroche N., Lafage-Proust M.-H., Alexandre C., Vico L.,
Focal contact clustering in osteoblastic cells under mechanical stress : microgravity and cyclic deformation,
Cell Adhesion Comm., 2003, 10(2):69-83.
PMID: 14681058

Mertani H. C., Raccurt M., Abatte A., Nilsson J., Törnell J., Billestrup N., Usson Y., Morel G.,
Nuclear translocation and retention of growth hormone,
Endocrinology, 2003, 144(7) : 3182-3195.
PMID: 12810575


2002
Costes J., Vial J.-C., Faury G., Deronzier A., Usson Y., Robert-Nicoud M., Verdetti J.,
Nitric oxyd synthesis, unlike respiration, influences intracellular oxygen tension,
Biochem. Byophys. Res. Com. 2002, 290:97-104.


Ohayon J., Cai H., Jouk P.-S., Usson Y., Azancot A.,
A model of the structural and functional development of the normal human fetal left ventricle based on a global growth law,
Computer Methods in Biomechanics and Biomedical Engineering, 2002,5:113-126.

2001
Sanz N., Gaillot A.C.,Usson Y., Baldeck P. & Ibanez A.,
Organic nanocrystals grown in sol-gel coatings,
J. Material Chemistry, 2001, 12:2723-272

Canet V., Montmasson M-P., Usson Y., Giroud F., Brugal G.,
Correlation between silver stained nucleolar organizer region area and cell cycle time,
Cytometry, 2001, 43:110-116.

Monier K., Héliot L., Rougeulle C., Heard E., Robert-Nicoud M., Vourc'h C., Bensimon A., Usson Y.,
Improvement of FISH mapping resolution on combed DNA molecules by iterative constrained deconvolution: a quantitative study.
Cytogenet. Cell Genet., 2001, 92:59-62.

Dacheux D., Goure J., Chabert J., Usson Y., Attree I.,
Pore-forming activity of type III system-secreted proteins leads to oncosis of Pseudomonas aeroginosa infected macrophages,
Mol. Microbiol.,2001, 40:76-85.

Garnier-Raveaud S., Usson Y., Cand F., Robert-Nicoud M., Verdetti J., Faury G.,
Identification of membrane calcium channels essential for cytoplasmic and nuclear calcium elevations induced by vascular endothelial growth factor in human endothelial cells,
Growth Factors, 2001, 19:53-48.
Guignandon A., Lafage-Proust M.-H., Usson Y., Laroche N., Caillot-Augusseau A., Alexandre C., Vico L.,
Cell cycling determines integrin-mediated adhesion in osteoblastic ROS 17/2.8 cells exposed to space-related conditions,
FASEB J., 2001, 15(11):2036-2038

Mourad A., Biard L., Caillerie D., Jouk P.-S., Raoult A., Usson Y.,
Geometrical modelling of the fibre organization in the human left ventricle,
in Functional imaging and modelling of the heart, T. Katila et al(Eds) : FIMH 2001
LNCS, 2001, 2230:32-38.


2000
Héliot L., Mongelard F., Klein C., O'Donohue M-F, Chassery J-M, Robert-Nicoud M., Usson Y.,
Nonrandom distribution of metaphase AgNOR staining patterns on human acrocentric chromosomes.
J. Histochem. Cytochem., 2000, 48:13-20.

Hazzouri M., Rousseaux S., Mongelard F., Usson Y., Pelletier R., Faure A.K., Vourc'h C., Sèle B.,
Genome organization in the human sperm nucleus studied by FISH and confocal microscopy.
Mol. Reprod. Dev., 2000, 55:307-315.
Guinard D., Usson Y., Guillermet C., Saxod R.,
PS-100 and NF 70-200 Double Immunolabeling for Human Digital Skin Meissner Corpuscle 3D Imaging.
J. Histochem. Cytochem., 2000, 48(2):295-302.

Caudron N., Valiron O., Usson Y., Valiron P., Job D.,
A reassessment of the factors affecting microtubule assembly and disassembly in vitro.
Journal of Molecular Biology, 2000, 297(1):211-220.

Jouk P.-S., Usson Y., Michalowicz G., Grossi L.,
Three-Dimensional cartography of the pattern of the myofibres in the second trimester fetal human heart.
Anatomy andEmbryology, 2000, 202:103-118.

Hazzouri M., Pivot-Pajot C., Faure A.-K., Usson Y., Pelletier R., Sèle B., Khochbin S., Rousseaux S.,
Regulated hyperacetylation of core histones during mouse spermatogenesis : involvement of histone-deacetylases.
European Journal of Cell Biology, 2000, 79:950-960.

Metzler-Guillemain C., Usson Y., Mignon C., Depetris D., Dubreuil G., Guichaoua M. R., Mattei M. G.,
Dynamic organisation of the X and Y chromosomes in human, chimpanzee and mouse pachytene nuclei using molecular cytogenetics and three-dimensional confocal analyses.
Chromosome Research, 2000, 8:571-584.
Baffert F., Usson Y., Tranqui L.,
Effects of prolonged exposure to hypoxia on morphological changes of endothelial cells plated on fibrin gel,
Eur J Cell Biol, 2000, 80 (1):78-86


1999
Ohayon J., Usson Y., Jouk P.-S., Cai H.,
Fiber orientation in human fetal heart and ventricular mechanics: A small perturbation analysis.
Computer Methods in Biomechanics and Biomedical Engineering, 1999, 2:83-105.
Mongelard F., Vourc'h C., Robert-Nicoud M., Usson Y.,
Quantitative assessment of the evolution of chromatin staining by DAPI during the course of FISH processing.
Cytometry, 1999,36:96-101.

Cai H., Usson Y., Jouk P.-S., Ohayon J.,
Fiber orientation in mid-gestation human fetal heart and ventricular mechanics.
Innov. Techn. Biol. Med., 1999, 20 (2):67-83.
Jolly C., Usson Y., Morimoto R.I.,
Rapid reversible relocalization of HSF1 within seconds to nuclear stress granules.
Proceedings of the National Academy of Sciences, 1999, 96:6769-6774


1998
Faury G., Usson Y., Robert-Nicoud M., Ladislas R., Verdetti J.,
Nuclear and cytoplasmic free calcium level changes induced by elastin peptides in human endothelial cells.
Proceedings of the National Academy of Sciences, 1998, 95:2967-2972.

Rousseaux S., Hazzouri M., Pelletier R., Monteil M., Usson Y., Sèle B.,
Disomy rates for chromosomes 14 and 21 studied by fluorescent in situ hibridization in spermatozoa from three men over 60 years of age.
Molecular Human Reproduction, 1998,4:695-699.

Guinard D., Usson Y., Guillermet C., Saxod R.,
Merkel complexes of human digital skin: 3D imaging with confocal laser microscopy and double immunofluorescence.
J. Comparative Neurology, 1998, 398:98-104.

1997
Chevret E., Rousseaux S., Monteil M., Y. Usson, Cozzi J., Pelletier R., Sèle B.,
Meiotic behaviour of sex chromosomes investigated by three-colour FISH on 35142 sperm nuclei from two 47,XYY males.
Human Genetics, 1997, 99:407-412.

Usson Y., Guignandon A., Laroche N., Lafage-Proust M-H., Vico L.,
Quantification of cell-matrix adhesion using confocal image analysis of focal ccontact associated proteins and interference reflection microscopy.
Cytometry, 1997, 28:298-304.
Guignandon A., Usson Y., Laroche N., Lafage-Proust M-H., Sabido O., Alexandre C., Vico L.,
Effects of intermittent or continous gravitational stresses on cell-matrix adhesion quantitative analysis of focal contacts in osteoblastic cells ROS 17/2.8,
Experimental Cell Research, 1997, 236:66-75.

Merle P.-L., Usson Y., Robert-Nicoud M., Verdetti J.,
Basic FGF enhances calcium permeable channel openings in adult rat cardiac myocytes: implication in the bFGF induced increase of fre Ca++ content.
Journal of Molecular and Cellular Cardiology,1997, 29:2687-2698.

Vailhe B., Ronot X., Tracqui P., Usson Y., Leone Tranqui T.,
In vitro angiogenesis is modulated by the mechanical properties of fibrin gels and is related to alphaVbeta3 integrin localisation.
In Vitro Cellular and Developmental Biology,1997,33:763-773.

Kay L., Li Z., Mericskay M., Olivares J., Tranqui L., Fontaine E., Tiivel E., Sikk P., Kaambre T., Samuel J-L, Rappaport L., Usson Y., Leferve X., Paulin D., Saks V. A.,
Study of regulation of mitochondrial respiration in vivo. An analysis of influence of ADP diffusion and possible role of cytoskeleton.
Biochimica et Biophysica Acta, 1997, 1322:41-59.


1996
Chevret E., Rousseaux S., Monteil M., Usson Y., Cozzi J., Pelletier R., Sèle B.,
Increased incidence of hyperhaploid 24,XY spermatozoa detected by three-colour FISH in a 46,XY/47,XXY male,
Human Genetics, 1996, 97:171-175.

Monier K., Usson Y., Mongelard F., Szepetowski P., Robert-Nicoud M., Vourc'h C.,
Metaphase and interphase mapping by FISH: improvement of chromosome banding and signal resolution in interphase nuclei by means of iterative deconvolution,
Cytogenetics and Cell Genetics, 1996, 72:200-204.
Wozniak Z.M., Usson Y., Parazza F., Champelovier P., Leroux D., Seigneurin D.,
Quantitative analysis of three-dimensional distribution of AgNOR proteins during interphase in leukemic cells,
Cytometry, 1996, 24:14-26.

Valiron O., Chevrier V.,Usson Y., Breviario F., Job D., Dejana E.,
Desmoplakin expression and organization at human umbilical vein endothelial cell-to-cell junctions,
Journal of Cell Science., 1996, 109:2141-2149.

Barret L., Soubeyran A.,Usson Y., Eysseric H., Saxod R.,
Characterization of the morphological variations of astrocytes in culture following ethanol exposure,
Neurocytology, 1996, 17:497-508.
Mongelard F., Poras I., Usson Y., Batteux B., Robert-Nicoud M., Avner P., Vourc'h C.,
A mouse chromosome specific YAC probe collection for in situ hybridization,
Genomics, 1996, 38:432-435.


1995
Eils R., Bertin E., Saracoglu K., Rinke B., Schrök E., Parazza F., Usson Y., Robert-Nicoud M., Stelzer E.H.K., Chassery J.-M., Cremer T., Cremer C.,
Application of confocal laser microscopy and three-dimensional Voronoi diagrams for volume and surface estimates of interphase chromosomes,
Journal of Microscopy, 1995, 177 (1): 150-161.

Jouk P.-S., Usson Y., Michalowicz G., Parazza F.,
Mapping of the orientation of myocardial cells by means of polarized light and confocal scanning laser microscopy,
Microscopy Research and Technique, 1995, 30: 480-490.

Parazza F., Bertin E., Wozniak Z., Usson Y.,
Analysis of the spatial distribution of AgNOR proteins in cell nuclei using simultaneous confocal scanning laser fluorescence and transmitted light microscopy,
Journal of Microscopy, 1995, 178 (3): 251-260.


1994
Usson Y., Parazza F., Jouk P.-S., Michalowicz G.,
Method for the study of the three-dimensional orientation of the nuclei of myocardial cells in fetal human heart by means of confocal scanning laser microscopy,
Journal of Microscopy, 1994, 174: 101-110.

Vignoud L., Usson Y., Balzac F., Tarone G., Block M.R.,
Internalization of the a5b1 integrin does not depend on "NPXY" signals,
Biochemical Biophysical Research Communications, 1994, 199 (2): 603-611.

Lizard G., Usson Y., Chignol M.-C., Chardonnet Y.,
Improvements in visualisation and localisation of human papillomavirus DNA in CaSki cells by fluorescence in situ hybridization , laser scanning confocal microscopy and three-dimensional reconstruction,
Analytical Cellular Pathology, 1994, 7 (1): 53-61.

1993
Parazza F., Humbert C., Usson Y.,
Method for 3D volumetric analysis of intranuclear fluorescence distribution in confocal microscopy,
Computerized Medical Imaging and Graphics, 1993, 17 (3): 189-200.

Tranqui L., Usson Y., Marie C., Block M.R.,
Adhesion of CHO cells to fibronectin is mediated by functionnally and structurally distinct adhesion plaques,
Journal of Cell Science, 1993,106 (1): 377-387.


1992
Marcelpoil R., Usson Y.,
Methods for the study of cellular sociology : Voronoi diagrams and parametrisation of the spatial relationships,
Journal of Theoretical Biology, 1992, 154, 359-369.

Usson Y., Humbert C.,
Methods for topographical analysis of intra-nuclear BrdUrd-tagged fluorescence,
Cytometry, 1992, 13 (6): 595-602.

Humbert C., Usson Y.,
Eukaryotic DNA Replication Is a Topographically Ordered process,
Cytometry, 1992, 13 (6): 603-614.

Humbert C., Santisteban M., Usson Y., Robert-Nicoud M.,
Intranuclear co-location of BrdUrd and PCNA by simultaneous immunofluorescent labelling and confocal microscopy in MCF-7 cells,
Journal of Cell Science, 1992, 103 (1): 97-103.


1991
Usson Y., Torch S., Saxod R.,
Morphometry of human nerve biopsies by means of automated cytometry: assessment with reference to ultrastructural analysis,
Analytical Cellular Pathology, 1991, 3 (2): 91-102.
Barret L., Torch S., Gonthier B., Usson Y., Saxod R.,
A morphometric evaluation of the effects of trichloroethylene and dichloroacetylene on the rat mental nerve. Preliminary results,
Neuroscience Letters, 1991, 131: 141-144.


1990
Juvin R., Camus E., Usson Y., Phelip X.,
An automatic method for bone histomorphometry: Assessment with reference to usual static and dynamic parameters,
Journal of Bone & Mineral Research, 1990, 5 (3) : 235-244.


1989
Torch S., Stoebner P., Usson Y., Drouet d'Aubigny G., Saxod R.,
There is no simple adequate sampling scheme for estimating the myelinated fibre size distribution in human peripheral nerve: a statistical ultrastructural study,
Journal of Neuroscience Methods, 1989, 27: 149-164.
Torch S., Usson Y., Saxod R.,
Automated morphometric study of human peripheral nerves by image analysis,
Pathology Research and Practice, 1989, 185: 567-571.

Duxson M. J., Usson Y.,
Cellular insertion in primary and secondary myotubes in embryonic rat muscles,
Development, 1989, 107: 243-251.

Duxson M. J., Usson Y., Harris A. J.,
The origin of secondary myotubes in mammalian skeletal muscles: ultrastructural studies,
Development, 1989, 7: 743-750.


1988
Usson Y., Saxod R.,
Schwann cell proliferation in the sciatic nerve of hypothyroid chick embryos studied by autoradiography and image analysis,
Journal of Neurocytology, 1988, 17: 639-648.


1987
Bouvet J., Usson Y., Legrand J.,
Morphometric analysis of the Purkinje cell in the developing cerebellar cortex of the normal and hypothyroid chick.
International Journal of Developmental Neuroscience, 1987, 5 (4): 345-355.

Usson Y., Torch S., Drouet d'Aubigny G.,
A method for automatic classification of large and small myelinated fibre populations in peripheral nerves.
Journal of Neuroscience Methods, 1987, 20: 237-248.


1986

Verna J-M, Usson Y., Saxod R.,
Differential growth of sensory neurons in vitro in presence of dermis and epidermis. A quantitative time-lapse analysis.
Cell Differentiation, 1986, 18: 183-188.

1985

Usson Y., Drouet d'Aubigny G.,
Multimodal frequency distribution analysis of peripheral nerves.
Analytical Quantitative Cytology Histology, 1985, 7: 294-298.




Books & book chapters

Chapter 6, "Cytométrie par analyse d'images"
in Dynamique de la cellule vivante
Xavier Ronot & Damien Schoevaert-Broussault, 1999
ISBN 2 85598 737-7 Edition INSERM 1999
maging of Nucleic Acids and Quantitation in Photonic Microscopy
Xavier Ronot & Yves Usson, 2001
ISBN/ISSN:0849308178 CRC LCC 2001
Chapter 5, "La tomographie en microscopie"
Yves Usson & Catherine Souchier
in La Tomographie - fondements mathématiques, imagerie microscopique et imagerie industrielle 
Traité IC2, Série Traitement du signal et de l'image
Pierre Grangeat, 2002
ISBN 2-7462-0356-1 Hermes sciences 2002		 Chapter 5, "Tomographic Microscopy"
Yves Usson & Catherine Souchier
in Tomography
Pierre Grangeat, 2009
ISBN: 978-1-84821-099-8  Wiley-ISTE 2009
Saks V., Appaix F., Usson Y., Guerrero K.,Olivares J., Seppet A.,Aliev M.,Margreiter R.,Kuznetsov A.
Localized control of oxidative phosphorylation within intracellular energetic units in heart cells: A possible solution of some old problems
Progress in Experimental Cardiology
Signal Transduction and Cardiac Hypertrophy 2003, Volume: 7 : 265-284