Main publications

Back to my home page.


This should list all my published papers (but check the "last modified" date at the bottom).
I've compiled a more detailed list, including talks and posters, for my work related to smart-pooling.

In addition you can look for my papers on pubmed, or maybe on DBLP (for computer science stuff) or google scholar.


25. Vallet S, Deddens L, Vonarburg A, Salza R, Faye C, Aranyos A, Thierry-Mieg N, Ricard-Blum S.
Strategies for Building Protein–Glycosaminoglycan Interaction Networks Combining SPRi, SPR, and BLI.
Chapter 11 of the Handbook of Surface Plasmon Resonance (2), 2017, 398-414. pdf.

24. Kherraf ZE, Christou-Kent M, Karaouzene T, Amiri-Yekta A, Martinez G, Vargas AS, Lambert E, Borel C, Dorphin B, Aknin-Seifer I, Mitchell MJ, Metzler-Guillemain C, Escoffier J, Nef S, Grepillat M, Thierry-Mieg N, Satre V, Bailly M, Boitrelle F, Pernet-Gallay K, Hennebicq S, Fauré J, Bottari SP, Coutton C, Ray PF, Arnoult C.
SPINK2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia in homozygotes.
EMBO Mol Med. 2017 May 29. pii: e201607461. doi: 10.15252/emmm.201607461. [Epub ahead of print] pdf. Full text online.

23. Escoffier J, Lee HC, Yassine S, Zouari R, Martinez G, Karaouzène T, Coutton C, Kherraf ZE, Halouani L, Triki C, Nef S, Thierry-Mieg N, Savinov SN, Fissore R, Ray PF, Arnoult C.
Homozygous mutation of PLCZ1 leads to defective human oocyte activation and infertility that is not rescued by the WW-binding protein PAWP.
Hum Mol Genet. 2016 Mar 1;25(5):878-91. pdf

22. Launay G, Salza R, Multedo D, Thierry-Mieg N, Ricard-Blum S.
MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities.
Nucleic Acids Res. 2015 Jan 28;43(Database issue):D321-7. pdf

21. Ben Khelifa M, Coutton C, Zouari R, Karaouzene T, Rendu J, Bidart M, Yassine S, Pierre V, Delaroche J, Hennebicq S, Grunwald D, Escalier D, Pernet-Gallay K, Jouk PS, Thierry-Mieg N, Toure A, Arnoult C, Ray PF.
Mutations in DNAH1, which Encodes an Inner Arm Heavy Chain Dynein, Lead to Male Infertility from Multiple Morphological Abnormalities of the Sperm Flagella.
Am J Hum Genet. 2014 Jan; 94(1):95-104. pdf

20. Coutton C, Abada F, Karaouzene T, Sanlaville D, Satre V, Lunardi J, Jouk PS, Arnoult C, Thierry-Mieg N, Ray PF.
Fine Characterisation of a Recombination Hotspot at the DPY19L2 Locus and Resolution of the Paradoxical Excess of Duplications over Deletions in the General Population.
PLoS Genet. 2013 Mar;9(3):e1003363. Pubmed. pdf

19. Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, Vidal M.
Proto-genes and de novo gene birth.
Nature. 2012 Jul 19;487(7407):370-4. pdf

18. Xin X, Boone C, Thierry-Mieg N.
Mapping interactomes with high coverage and efficiency using the shifted transversal design.
Methods Mol Biol. 2012;812:147-59. pdf

17. Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S.
MatrixDB, the extracellular matrix interaction database.
Nucleic Acids Res. 2011 Jan;39(Database issue):D235-40. pdf

16. Sambourg L, Thierry-Mieg N* (*: corresponding author).
New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size.
BMC Bioinformatics. 2010 Dec 21;11:605. Get the pdf on the BMC website or read it online.

15. Chautard E, Thierry-Mieg N, Ricard-Blum S.
Interaction networks as a tool to investigate the mechanisms of aging.
Biogerontology. 2010 Aug;11(4):463-73. Epub 2010 Mar 7. pdf

14. Carvunis AR, Gomez E, Thierry-Mieg N, Trilling L, Vidal M.
Systems biology: from yesterday's concepts to tomorrow's discoveries [Article in French].
Med Sci (Paris). 2009 Jun-Jul;25(6-7):578-84. pdf

13. Xin X*, Rual JF, Hirozane-Kishikawa T, Hill DE, Vidal M+, Boone C+, Thierry-Mieg N+* (*: contributed equally; +: corresponding authors).
Shifted Transversal Design smart-pooling for high coverage interactome mapping.
Genome Res. 2009 Jul;19(7):1262-9. Epub 2009 May 15. pdf (the Supp Data file is also available on my smart-pooling page).

12. Sultan A, Strodthoff D, Robertson AK, Paulsson-Berne G, Fauconnier J, Parini P, Ryden M, Thierry-Mieg N, Johansson ME, Chibalin AV, Zierath JR, Arner P, Hansson GK.
T cell-mediated inflammation in adipose tissue does not cause insulin resistance in hyperlipidemic mice.
Circ Res. 2009 Apr 24;104(8):961-8. Epub 2009 Mar 19. pdf

11. Chautard E, Ballut L, Thierry-Mieg N*, Ricard-Blum S* (*: corresponding authors).
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
Bioinformatics. 2009 Mar 1;25(5):690-1. Epub 2009 Jan 15. pdf

10. Chautard E, Thierry-Mieg N, Ricard-Blum S.
Interaction networks: From protein functions to drug discovery. A review.
Pathol Biol (Paris). 2009 Jun;57(4):324-33. Epub 2008 Dec 13. pdf

9. Schliep A, Shokrollahi A, Thierry-Mieg N (editors).
Dagstuhl Seminar 08301 Report: Group Testing in the Life Sciences.
Dagstuhl Seminar Proceedings, July 2008, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, Germany.
Seminar homepage.

8. Thierry-Mieg N*, Bailly G (*: corresponding author).
Interpool: interpreting smart-pooling results.
Bioinformatics. 2008 Mar 1; 24(5):696-703. pdf

7. Thierry-Mieg N.
Pooling in systems biology becomes smart.
Nat Methods. 2006 Mar; 3(3):161-2. pdf

6. Thierry-Mieg N.
A new pooling strategy for high-throughput screening: the Shifted Transversal Design.
BMC Bioinformatics. 2006 Jan 19; 7:28. pdf

5. Davy A, Bello P, Thierry-Mieg N, Vaglio P, Hitti J, Doucette-Stamm L, Thierry-Mieg D, Reboul J, Boulton S, Walhout AJ, Coux O, Vidal M.
A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome.
EMBO Rep. 2001 Sep; 2(9):821-8.

4. Reboul J, Vaglio P, Tzellas N, Thierry-Mieg N, Moore T, Jackson C, Shin-i T, Kohara Y, Thierry-Mieg D, Thierry-Mieg J, Lee H, Hitti J, Doucette-Stamm L, Hartley JL, Temple GF, Brasch MA, Vandenhaute J, Lamesch PE, Hill DE, Vidal M.
Open-reading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans.
Nat Genet. 2001 Mar; 27(3):332-6.

3. Thierry-Mieg N*, Trilling L* (*: corresponding authors).
InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans.
In O. Gascuel M.F. Sagot eds., JOBIM 2000 selected papers, Lecture Notes in Computer Science (2001), 2066, 135-146. pdf

2. Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF, Brasch MA, Thierry-Mieg N, Vidal M.
Protein interaction mapping in C. elegans using proteins involved in vulval development.
Science. 2000 Jan 7; 287(5450):116-22.

1. Walhout M, Endoh H, Thierry-Mieg N, Wong W, Vidal M.
A model of elegance.
Am J Hum Genet. 1998 Oct; 63(4):955-61.


Last modified 06/06/2017