BCM - Computational and Mathematical Biology
|
Home Publications Software People Teaching |
| Publications |
| Blum M.G.B., M.A. Nunes, D.
Prangle, S.A. Sisson. A comparative review of
dimension reduction methods in approximate Bayesian
computation. arXiv:1202.3819
(2012) |
 |
| Sjödin P., A.E. Sjöstrand, M.
Jakobsson, M.G.B Blum. Resequencing data provide no
evidence for a human bottleneck in Africa during the
penultimate glacial period. Molecular
Biology and Evolution, advance access (2012)
Supp Mat |
|
| Csilléry K., O.
François, M.G.B.
Blum.
abc: an R package for Approximate
Bayesian Computation (ABC). Methods
in Ecology and Evolution
doi:10.1111/j.2041-210X.2011.00179.x (2012)
|
|
| Jay F., M.G.B.
Blum, E. Frichot, O.
François.
Modèles à variables latentes en génétique des
populations. Journal
de la société française de statistique
152:3-20 (2011) |
|
| Jay F., O. François, M.G.B. Blum.
Predictions of Native American Population Structure
Using Linguistic Covariates in a Hidden Regression
Framework. PLoS ONE
6: e16227 (2011) |
|
| Blum M.G.B.,
M. Jakobsson. Deep divergences of human gene trees and
models of human origins. Molecular
Biology and Evolution, 28: 889-898 (2011) Featured by Faculty of 1000. There is also a press release from the CNRS, and a Web article in the French journal Pour La Science. |
|
| Blum M.G.B. Approximate Bayesian
Computation: a nonparametric perspective. Journal
of
the American Statistical Association, 105:
1178-1187, Supp
Mat 1, Supp
Mat 2 (2010) |
|
| Blum M.G.B., V-C Tran. HIV
with contact tracing: a case study in Approximate
Bayesian Computation.
Biostatistics, 11: 644-660 (2010) |
|
| Blum M.G.B. Choosing the Summary
Statistics and the Acceptance Rate in Approximate
Bayesian Computation. In
COMPSTAT
2010-Proceedings
in Computational Statistics, ed. G. Saporta,
Y. Lechevallier. Springer, Physica Verlag pp
47-56 (2010) |
|
| Csilléry K., M.G.B. Blum,
O.E. Gaggiotti, O. François. Approximate
Bayesian Computation in practice.
Trends in Ecology & Evolution, 25:
410-418 (2010) |
|
| Csilléry K., M.G.B. Blum,
O.E. Gaggiotti, O. François. Invalid
arguments against ABC: A reply to AR Templeton.
Trends in Ecology & Evolution, 25:
490-491 (2010) |
|
| Blum
M.G.B., O. François. Non-linear regression models for
Approximate Bayesian Computation. Statistics and Computing, 20: 63-73 (2010). Supporting Information. R code 2 Examples in R: Parameter estimation; Model selection Now implemented in the abc R package |
|
| Naderi
S.,
H-R Rezaei, F. Pompanon, M.G.B. Blum, R. Negrini, H-R
Naghash, O. Balkız, M. Mashkour, O. Gaggiotti, P.
Ajmone-Marsan, A. Kence, J-Denis Vigne, P.Taberlet.
The goat domestication process inferred from
large-scale mitochondrial DNA analysis of wild and
domestic individuals. Proceedings
of
the National Academy of Sciences, 105:
17659-64 (2008) A digest of the paper can be found in the CNRS website |
|
| Forhan
G.,
J-L Martiel, M.G.B. Blum. A deterministic model of
admixture and genetic introgression: The case of
Neanderthal and Cro-Magnon. Mathematical
Biosciences, 216:71-76 (2008) |
|
| François
O.,
M.G.B. Blum, M. Jakobsson, N.A. Rosenberg. Demographic
history of European populations of Arabidopsis
Thaliana. PLoS
Genetics 4(5)(2008) A report in the CNRS website about this work |
|
| Durand
E.,
M. G. B. Blum and O. François. Prediction of group
patterns in social mammals based on a coalescent
model. Journal of
Theoretical Biology 249: 262-270 (2007) |
|
| Blum
M.G.B. and N.A. Rosenberg. Estimating the number of
ancestral lineages using a maximum likelihood method
based on rejection sampling. Genetics
176: 1741-1747 (2007). |
|
| Rosenberg N.A.
and
M.G.B Blum. Sampling properties of homozygosity-based
statistics for linkage disequilibrium. Mathematical
Biosciences 208: 33-47 (2007). |
|
| Mooers
A.O.,
L.
J. Harmon, M. G. B. Blum, D. H. J. Wong and S.B.
Heard. Some models of phylogenetic tree shape in Reconstructing
Evolution:
new mathematical and computational advances
(O. Gascuel and M. Steel, eds.), Oxford University
Press, Oxford (2007). |
|
|
Rosenberg
N.
A., S. Mahajan, C. Gonzalez-Quevedo, M. G. B.
Blum, L. Nino-Rosales, V. Ninis, P. Das, M. Hegde,
L. Molinari, G. Zapata, J. L. Weber, J. W. Belmont
and P. I. Patel. Low Levels of Genetic Divergence
across Geographically and Linguistically Diverse
Populations from India. PLoS
Genetics 2: 2052-2061 (2006).
|
|
|
Blum
M.G.B. , O.François and S. Janson. The mean,
variance and joint distribution of two statistics
sensitive to phylogenetic tree balance. Annals
of
Applied Probability 16: 2195-2214
(2006).
|
|
| Blum
M.G.B., E. Heyer, O. François and F. Austerlitz.
Matrilineal fertility inheritance detected in
hunter-gatherer populations using the imbalance of
gene genealogies. PLoS
Genetics, 2:1138-1146 (2006). |
|
| Blum
M.G.B. and O.François. Which random processes describe
the Tree of Life? A large-scale study of phylogenetic
tree imbalance.
Systematic
Biology 55: 685-691 (2006).
Supplementary Material |
|
|
Blum
M.G.B. and O. François. On statistical tests of
phylogenetic imbalance: the Sackin and other
indices revisited. Mathematical
Biosciences, 195: 141-153 (2005).
|
|
|
Blum
M.G.B. and O. Francois. External branch length and
minimal clade size under the neutral coalescent.
Advances in Applied Probability, 37:
647-662 (2005).
|
|
| Bortolussi
N.
, E. Durand, M. Blum, O.Francois. APTreeshape:
Statistical analysis of phylogenetic tree shape.
Bioinformatics, 22: 363-364 (2005). |
|
|