BCM - Computational and Mathematical Biology  

Groupe De Travail
Groupe de travail en génétique des populations
Les publications dont nous avons parlé au GDT
Date Lieu
7 Avril TIMC A.J. Drummond, A. Rambaut, B. Shapiro, O.G. Pybus Mol Biol Evol 22: 1185-1192 (2005)
25 Mars TIMC A.R. Templeton. Statistical hypothesis testing in intraspecific phylogeography: nested clade phylogeograph vs. approximate Bayesian computation. Molecular Ecology 18: 319-331 (2009)
9 Mars LECA M. Kirkpatrick and N.H. Barton. Evolution of a species’ range. American Naturalist 150: 1-23 (1997)
18 Février LECA T. Jombart, S. Dray and A-B. Dufour. Finding essential scales of spatial variation in ecological data: a multivariate approach. Ecography 32: 161–168 (2009)
4 Février LECA T. Jombart ,S. Devillard,A.B; Dufour,D. Pontier. Revealing cryptic spatial patterns in genetic variability by a new multivariate method. Heredity 101:92-103 (2008)
9 Janvier TIMC

R. Jiang, S. Tavaré and P. Marjoram. Population genetic inference from resequencing data. Genetics 18:187–197 (2009)

5 Décembre TIMC J. Hawks, E.T. Wang, G.M. Cochran, Henry C Harpending, Robert K Moyzis. Recent acceleration of human adaptive evolution. PNAS 104:20753-20758 (2007)
7 Novembre TIMC J.W. Lichstein, T.R. Simons, S.A. Shriner, K.E. Franzreb. Spatial Autocorrelation And Autoregressive Models In Ecology. Ecological Monographs, 72: 445–463 (2002)
10 Octobre TIMC C.A. Edmonds, A.S. Lillie, L.L. Cavalli Sforza. Mutations arising in the wave front of an expanding population. PNAS 101:975:979 (2004)
24 Septembre TIMC N. Patterson, A. L. Price, D. Reich. Population Structure and Eigenanalysis". PLoS Genetics  2(12): e190 (2006)
2 Juillet TIMC J. Mu et al. Recombination hotspots and population structure in Plasmodium Falciparum. PLoS Biology 3(10): e335 (2005)
25 Juin TIMC G. Hellenthal, Auton A., Falush D.  Inferring Human Colonization History Using a Copying Model. PLoS Genetics 4(5): e1000078 (2008)
18 Juin TIMC N. Li, M. Stephens. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism dat. Genetics 165: 2213-2233 (2003)
7 Mai LECA P. Nosil et al. Heterogeneous genomic differentiation between walking-stick ecotypes: "isolation by adaptation" and multiple roles for selection. Evolution 62: 316–336 (2007)
9 Avril TIMC K. Hunley, J.C. Long. Gene flow across linguistic boundaries in Native North American populations. P.N.A.S. 102: 132-1317 (2005)
21 Mars TIMC K.E. Lohmueller et al. Proportionally more deleterious genetic variation in European than in African populations. Nature 451: 994-997 (2008)
7 Mars TIMC M. Jakobsson et al. Genotype, haplotype and copy-number variation in worldwide human populations. Nature  451: 998-1003 (2008)
8 Février TIMC R. Nielsen. Genomic scans for selctive sweeps using SNP data. Genome Res 15: 1566-1575 (2005)
28 Janvier LECA E.G. Leigh. Neutral Theory: a historical perspective. J Evol Biol 20 2075-2091 (2007)
14 Janvier TIMC B. Peng, C.I. Amos, M. Kimmel. Forward-time simulations of human populations with complex diseases. PLoS Genetics 3(3): e47 (2007)

17 Décembre TIMC G.A.T McVean, S.R. Myers et al. The fine-scale structure of recombination rate variation in the human geneome. Science, 304: 581-584 (2004)
6 Décembre TIMC N.J.R. Fagundes et al. Statistical evaulation of alternative models of humlan evolution. PNAS, doi:10.1073/pnas.0708280104 (2007)
22 Novembre TIMC I) U. Dieckmann and M. Doebelie. On the origin of species by sympatric speciation. Nature, 400: 354-357 (1999)
II) M. Doebelie and U. Dieckmann. Speciation along environmental gradients. Nature, 421: 259-264 (2003)
7 Novembre
TIMC J. Binladen et al. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS ONE 2: e197 doi:10.1371/journal.pone.0000197 (2007)
24 Octobre LECA R.A. Edwards et al. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7: doi:10.1186/1471-2164-7-57 (2006)
11 Octobre TIMC G.J. Ackland, M. Signitzer, K. Straford and M. Cohen. Cultural hitchiking on the wave of advance of beneficial technologies. PNAS, 104: 8714-8719 (2007)
20 Juillet T. Nagylaki, Random Genetic Drift in a Cline. PNAS, 75:423-426 (1978)
26 Juin P.F. Slade and J. Wakeley. The structured ancestral selection graph and the many-demes limit. Genetics, 169: 1117-1131 (2005)
12 Juin N. Mekel-bobrov et al. Ongoing evolution of ASPM, a brain size determinant in Homo Sapiens. Science 308: 1720-1722 (2005)
29 Mai P.C. Sabeti et al. Detecting positive selection in the human genome from haplotype structure. Nature, 419: 832-837 (2002)
22 Mai Y. Kim and W. Stephan. Detecting a local signature of genetic hitchiking along a recombining chromosome. Genetics, 160: 765-777 (2002)
25 Avril
23 Janvier
16 Janvier M. Nordborg et al. The pattern of polymorphism in Arabidopsis thaliana. PLoS Biology 3: e196 (2005)
10 Janvier J. Fort and V. Mendez. Time delayed theory of the Neolithic transition in Europe. Physical review letters, 82: 867-870 (1999)
20 Décembre J. Novembre, A.P. Galvani and M. Slatkin. The geographic spread of the CCR5 Δ32 HIV-resistance allele. Plos Biology 3: e339 (2005)
13 Décembre I. Dupanloup, S. Schneider and L. Excoffier. A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11: 2571-2581 (2002).
6 Décembre S.K. Wasser, A.M. Shedlock, K. Comstock, E.A. Ostrander, B; Mutayoba, M. Stephens. Assigning African elephant DNA to geographic region of origin: applications to ivory trade. PNA.S, 101: 14847-14852 (2004)
30 Novembre R. Pinhasi, J. Fort and A.J. Ammerman. Tracing the origin and spread of agriculture in Europe. Plos Biology, 3: e410 (2005)
22 Novembre S. Ramachandran, O. Deshpande, C.C. Roseman, N.A. Rosenberg, M.W. Feldman and L.L. Cavalli-Sforza. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. PNAS, 103: 15942-15947 (2005)